HCS Analyzer is a.NET Core application that allows you to analyze and process high content screening (HCS) data. You can create statistical analysis from HCS images, process genetic data, view class comparison, build your own personalized reference library, export high content screening images, and a lot more.
Import files in several formats: CSV, TXT, TIFF, and more. Import in several ways: current plate by plate, entire screen or single cell. For each screen, you can select the controls to be extracted from the data. Import control: Box, Slice, Table, Picker, Card, or Text.
View all classes, data and meta information from an HCS screen. You can select a class, and you will be able to view the fields, all meta information and classes from a given image. View class by using this parameters: display or display #. It is possible to add your own classes to the library, or select the most common ones.
Align classes from different images. You can compare or align your reference library with other libraries from the database. In addition, you can apply different similarity transformations for each comparison.
View single or multivariate data in a single screen. You can display the results from a comparison, single cell, or plate (single/multivariate). It is possible to display the results in a new image. It is possible to add the name of the label to the results to make it easier to understand.
Filter your data using the InfoGain, OneR, and Greedy strategies. Filter the data using the B-score, Diffusion, Z-score, or threshold. Each of them has specific configurations. Data can be filtered by type: cellular, genetic, protein or molecular.
Generate univariate or multivariate HCS screens. You can create an univariate or a multivariate screen with your data. You can create a univariate or multivariate screens with the same parameters of the experiment.
Export high content screening images in several formats, TIFF, PDF, PNG, JPG, BMP, and more. It is possible to export them in the original quality, or convert them in formats that can be loaded in other software.
Export multiple high content screening images, and it is possible to select whether you want to include or exclude the time information.
Create new images or 3D worlds from HCS. You can create a new high content screening image from a file or HCS screen. It is 384a16bd22
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